Megatrend · Synthetic Biology

Teaching plants to make their own fertilizer

The nitrogen fertilizer the whole world runs on is made from natural gas, and it releases an enormous amount of carbon. So what if we coated "microbes" onto seeds and let them pull nitrogen out of the air to feed the roots instead? That's the promise of this era — and the reason it hasn't been as easy to pull off as everyone hoped.

Category Synthetic Biology (non-pharma) Level Sub-theme Maturity Scaling Read time ~11 min
A microbe-coated seed sprouts into a seedling whose roots draw nitrogen from the air, replacing a bag of chemical fertilizer set aside next to it.
ภาพประกอบ (hero.png)
Let the plant find its own fertilizer. The heart of this trend is a microbe coated onto the seed that goes down and pulls nitrogen from the air to feed the roots — instead of a bag of chemical fertilizer.

01What it is

Modern farming rests on just a handful of chemicals — nitrogen fertilizer to grow the plants, and pesticides and fungicides to keep pests away. All of it works and it's cheap. But it comes with a hidden cost: it's made from fossil fuels, it releases carbon, and it runs off into the water and pollutes it. The question that sparked this whole industry is: can we use "living things" instead of "chemicals" to feed and protect plants?

Agri-Biotech & Microbial Inputs is about using the tools of synthetic biology to design a new kind of "farm input" — living things, or substances made by living things — instead of pure chemistry. Roughly, it splits into three groups:

  • Nitrogen-fixing microbes (microbial nitrogen): bacteria that pull nitrogen from the air and feed it to plant roots, letting the plant make part of its own "fertilizer" and cutting chemical-fertilizer use
  • Biological crop protection (biologicals): covers biopesticide (microbes/natural substances that fight pests) and biostimulant (substances that help plants grow better, resist drought, and take up nutrients more efficiently)
  • Precision gene-edited traits (gene-edited traits): using tools like CRISPR to edit a plant's genes for disease resistance, drought tolerance, or better yield — without inserting genes from a different species the way old-school GMO did
Key terms
Biologicals (biological farm inputs)

An umbrella term for farm products whose active ingredient is "a living thing or something made by one" — as opposed to synthetic chemicals. It breaks into biofertilizer (microbes that help deliver nutrients), biostimulant (boosts growth/resilience), and biopesticide (fights pests). The strength is that it's friendly to the environment and the soil. The weakness is that it "works inconsistently" — because it's a living thing that depends on the local weather. That point is the heart of this whole lesson.

Within Synthetic Biology (non-pharma), this node is about taking synthetic biology onto the "field" — not making food in a fermentation tank like Alt-Protein, but living with real plants in real soil.

02Why it matters

To understand why the world wants to stop leaning on chemical nitrogen fertilizer, you have to know how it's made — through the Haber-Bosch process, which combines nitrogen from the air with hydrogen from "natural gas" under high heat and pressure. Put simply, nitrogen fertilizer is a direct product of fossil fuels.

The numbers hit hard: this process eats about 3–5% of the world's natural gas, and the synthetic-nitrogen-fertilizer chain emits roughly 1.13 billion tons of CO₂ a year ≈ 2.1% of global emissions — more than the entire commercial-aviation industry. Worse still, the nitrogen plants don't use up flows into rivers and the sea, creating "dead zones" so low in oxygen that nothing can live there.

~2.1% the share of global greenhouse-gas emissions that comes from the synthetic-nitrogen-fertilizer chain (~1.13 billion tons of CO₂/yr) — and it also eats 3–5% of the world's natural gas

Add three more pressures on top — wildly volatile fertilizer costs (prices spiked after the Ukraine war), tightening regulation (the EU aims to halve chemical-pesticide use and curb nitrogen runoff), and the soil-health movement — and demand for biologicals keeps growing. The global market for biological farm inputs sits at around $18.4 billion in 2025 and is expected to reach ~$35 billion by 2030.

The global market for agricultural biological inputs
Market size ($ billions) — 2030–2035 are projections
Source: MarketsandMarkets (CAGR ~13.7% for 2025–2030); the 2035 value is from Roots Analysis/FactMR — direction, not precision

03How it works

The heart of this trend is easy to grasp with a single example: nitrogen-fixing microbes. The air we breathe is 78% nitrogen — but plants can't use it directly. They need nitrogen in the form of "ammonia," which we normally make in a Haber-Bosch plant and then spread on fields as fertilizer. The idea behind agri-biotech is to move that factory right down to the plant's roots — in the form of bacteria.

Nitrogen-fixing microbes feed nitrogen to plant roots, replacing chemical fertilizer A microbe-coated seed sprouts into a plant. The microbes at the roots pull nitrogen from the air, turn it into ammonia, and feed it to the roots, replacing the abandoned bag of chemical fertilizer Soil surface Air · nitrogen (N₂) 78% N₂ N₂ N₂ 1 Coat with microbes onto the seed 2 Microbes settle at the roots 3 Pull N₂ from the air Turn it into ammonia Feed it directly to the roots 4 Reduced chemical fertilizer
A tiny fertilizer factory at the roots. (1) coat the seed with microbes → (2) they grow down to the roots → (3) they pull nitrogen from the air, turn it into ammonia, and feed it to the roots → (4) less chemical fertilizer used

In reality, this technology hasn't replaced all fertilizer yet — it replaces "part" of it. 2025 field data from Pivot Bio (the leader here) shows its PROVEN G3 product in corn replaced synthetic nitrogen by an average of 33 pounds per acre, while raising yield by an average of 2.1 bushels, and the company claims the product is about 60% cheaper than nitrogen fertilizer. Biopesticides/biostimulants work differently — some are fungi or bacteria that eat the pests, others are substances that help the plant build immunity or handle stress better.

04Where it sits in SynBio

This node is one of the "field" branches of Synthetic Biology (non-pharma), and it connects to its relatives in the same family in ways that make sense:

  • Running parallel to Alt-Protein & Precision Fermentation: both use microbes as "machines" — that side ferments protein in a tank, this side releases microbes into real soil. Different arenas, but the same biotech foundation
  • Extending into Bio-Based Materials: the skill of designing microbes to make a desired substance works for both biofertilizers and bio-materials — same platform, different destination
  • Directly backing Climate-Resilient Agriculture: drought- and disease-tolerant plants and healthier soil are the heart of farming that can withstand a volatile climate — biologicals are one tool in that box
  • Depending on AI: selecting and designing microbial strains that "actually work in many different soils" requires analyzing huge amounts of genomic and field data. AI and computational biology speed this up
A perspective — the most important connection The most powerful link is to decarbonization, because nitrogen fertilizer is one of the "hardest-to-cut" emission sources in the food system. If nitrogen-fixing microbes really scale, they become one of the few ways to genuinely decarbonize agriculture — and that's exactly why green money is so interested in them.

05Where it stands now

To tell this story honestly, we have to be clear: the promise is huge, but proving it in the field is still hard — and the market has already punished several players who promised too much.

The same field split in half: one side grows lush, the other grows unevenly — conveying that the microbe's effect depends on the weather.
ภาพประกอบ (field.png)
The biggest problem: inconsistent results. Same field, different year, different soil — different results. Because it's a living thing, not a chemical.

The heart of the problem is that biologicals don't work consistently. Chemicals act the same everywhere, every time, but microbes are living things whose effect depends on soil temperature, moisture, and the microbes already in that particular soil. Surveys show 41% of ag retailers and farmers name "lack of confidence in performance" as the number-one barrier to adopting biologicals, and many of the benefits (soil health, stress tolerance) come gradually and are harder to see than the instant effect of chemicals. So adoption is slow, and the products have to fight chemistry that's cheap and proven.

This difficulty is reflected in the wreckage of once-hot companies: Benson Hill went public via SPAC at a valuation of about $2 billion, then ultimately filed for Chapter 11 bankruptcy in March 2025; the stock collapsed from $10 to ~$0.01 and was delisted · Indigo Ag was once the world's most highly valued agtech startup at $3.5 billion, but its latest funding round valued it at about $200 million (down ~94%) · AgBiome, which had raised $230 million, laid off its entire staff in late 2023 and then sold off its brands.

When overhyped promises get punished by the market
The drop in valuation, from peak to present (approximate %)
Source: SEC / company news; Calcalist (Indigo Ag −94%) — a reminder that the right direction doesn't mean every player survives

But this isn't the end — it's a "sorting." Money and hope are moving from cash-burning startups to patient incumbents with distribution channels. Corteva poured in to buy Stoller ($1.2 billion) and Symborg, building one of the world's largest biologicals units · Bayer keeps pushing deals to buy bioinsecticide technology · and Novonesis (born from the merger of Novozymes + Chr. Hansen) is a microbe giant that's already profitable — a different league from still-loss-making startups. The most-watched private player, Pivot Bio, just closed a $430 million Series D (led by DCVC and Temasek) but still hasn't gone public.

Key players in this field
Note
We arrange the players by their role in the value chain, not by raw market cap — because this field splits clearly between profitable incumbents and pioneers still proving the model, and the hottest real players in nitrogen fixation are still private companies off the stock market.
CortevaCTVA · US
United States · seed/agrochemical giant
Bought Stoller ($1.2B) and Symborg to build one of the world's largest biologicals units — the incumbent's strategy of "swallowing" the new technology into a distribution channel it already owns.
core · incumbent swallowing new tech
BayerBAYN · DE
Germany · crop science
Keeps pushing deals to bolster its biologicals portfolio (such as a bioinsecticide deal with Aphea.Bio) — using its scale and global farmer network to push biological products alongside its existing chemical lines.
core · crop-science leader
NovonesisNSIS · DK
Denmark · microbe giant
Born from the merger of Novozymes + Chr. Hansen, the world leaders in microbes and enzymes — the "picks and shovels" of biologicals, already profitable, unlike the startups still burning cash.
core · microbe maker
Pivot Bioprivate · US
United States · nitrogen fixation
The leader in nitrogen-fixing microbes. Closed a $430M Series D (DCVC, Temasek). 2025 field results replaced synthetic N by an average of 33 lbs/acre in corn — still private, the real player investors are waiting to see go public.
core · nitrogen-fixation pioneer
UPLUPL · IN
India · crop protection
One of the crop-protection leaders in emerging markets, with a biosolutions business line (Natural Plant Protection) — an example of a player outside the U.S./Europe pushing biologicals in price-sensitive markets.
secondary · crop protection
FMCFMC · US
United States · agrochemical
An agrochemical company expanding its biologicals portfolio (the Plant Health brand) alongside its existing insecticide lines — reflecting the industry's mainstream pattern of "chemistry extending into biologicals."
secondary · chemistry extending into biologicals
United States · platform
A platform for designing living organisms, developing microbial strains under contract for ag partners (it has worked on nitrogen fixation) — playing the role of a "microbe design factory" rather than selling directly to farmers.
secondary · design platform
GenusGNS · GB
United Kingdom · animal genetics
A leader in genetics and breeding (including gene editing for disease resistance in livestock) — representing the "gene-edited traits" side, the other leg of agri-biotech beyond microbes.
secondary · gene editing
Benson Hillformerly BHIL · US
United States · cautionary tale
Once valued at ~$2B via SPAC, it ultimately went bankrupt under Chapter 11 (March 2025); the stock fell from $10 to ~$0.01 and was delisted — an expensive lesson that the right direction isn't enough if the business model doesn't turn a profit.
secondary · cautionary tale

06The road ahead

The first direction is that "consistency" is the deciding battlefield. Whoever can make biologicals work predictably across many soils and climates will unlock an enormous market. That's exactly why AI and field data matter — the goal is to move from "sometimes it works" to "it definitely works if you use it on the right field."

A giant agricultural-chemical company slowly grows a small microbe lab next to its existing fertilizer plant — conveying an incumbent absorbing the new technology.
ภาพประกอบ (incumbent.png)
The winner may be the incumbent. The agrochemical giants with distribution and capital are "swallowing" biotech in as a new branch of themselves.

The second direction is the "supplement," not "replace," model — instead of quitting chemical fertilizer entirely, farmers cut it by 20–40% and top it up with microbes. This picture is far more realistic and easier to sell than "go 100% chemical-free," and it lets the products seep gradually into real fields.

The third direction is that the incumbents will be the quietest winners. The lessons from Benson Hill and Indigo Ag taught the whole industry that reach to millions of farmers + deep R&D budgets + the patience to wait several seasons for results matter more than the cool technology in the hands of a startup that runs out of money first — which is why Corteva, Bayer, and Novonesis are well positioned to harvest the market as it matures.

07Challenges & risks

The first and biggest risk is inconsistent field performance. As long as biologicals "work sometimes and not others" depending on the weather, farmers hesitate to bet a whole season's harvest on them — 41% say they don't trust the results. This is the real wall to adoption.

The second risk is that it has to fight cheap, proven chemistry. Chemical fertilizers and pesticides act instantly, cost little, and farmers have known them for decades. So biologicals have to be genuinely better or cheaper, not just "environmentally friendly" — and when chemical-fertilizer prices fall, the incentive to switch shrinks even further.

The third risk is slow adoption and the startup graveyard. The cycle for this technology is long (you have to test it over several seasons), while startup capital is limited, so many run out of money before proving the model — Benson Hill, Indigo Ag, and AgBiome are living witnesses. Investors who chase "hot agtech startups" without looking at the path to profit usually get badly hurt.

The fourth risk is regulation that can be both a tailwind and a headwind. The EU clamping down harder on pesticides and nitrogen helps boost demand for biologicals — but on the other side, registering biological products and gene-edited plants carries high uncertainty, varies country by country, and can shift with politics.

The bottom line for investors Agri-Biotech is the trend where "the direction is clearly right, but the pace is slow and who wins is everything" — the tailwinds from fertilizer costs, regulation, and soil health are real, but the inconsistency in the field makes adoption slower than the pretty CAGR numbers suggest. The lesson of the first round says to beware startups that overpromise, and to look for "picks and shovels": incumbents and microbe makers with enough distribution, capital, and patience to wait for the technology to prove itself in real fields.

In short: Agri-Biotech is the effort to teach plants to make their own fertilizer and protect themselves, to free farming from fossil-based chemistry — a powerful idea the world needs. But because it's "a living thing in real soil," not a chemical formula in a bottle, it moves slowly, stumbles often, and punishes the impatient. Understanding this tension is understanding why a "necessary" trend is still littered with the wreckage of companies that failed.

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